Quantifying Vegetation Biophysical Variables from Imaging Spectroscopy Data: A Review on Retrieval Methods

An unprecedented spectroscopic data stream will soon become available with forthcoming Earth-observing satellite missions equipped with imaging spectroradiometers. This data stream will open up a vast array of opportunities to quantify a diversity of biochemical and structural vegetation properties. The processing requirements for such large data streams require reliable retrieval techniques enabling the spatiotemporally explicit quantification of biophysical variables. With the aim of preparing for this new era of Earth observation, this review summarizes the state-of-the-art retrieval methods that have been applied in experimental imaging spectroscopy studies inferring all kinds of vegetation biophysical variables. Identified retrieval methods are categorized into: (1) parametric regression, including vegetation indices, shape indices and spectral transformations; (2) nonparametric regression, including linear and nonlinear machine learning regression algorithms; (3) physically based, including inversion of radiative transfer models (RTMs) using numerical optimization and look-up table approaches; and (4) hybrid regression methods, which combine RTM simulations with machine learning regression methods. For each of these categories, an overview of widely applied methods with application to mapping vegetation properties is given. In view of processing imaging spectroscopy data, a critical aspect involves the challenge of dealing with spectral multicollinearity. The ability to provide robust estimates, retrieval uncertainties and acceptable retrieval processing speed are other important aspects in view of operational processing. Recommendations towards new-generation spectroscopy-based processing chains for operational production of biophysical variables are given

Observation and assessment of model retrievals of surface exchange components over a row canopy using directional thermal data

Land surface temperature is an essential climate variable that can serve as a proxy for detecting water deficiencies in croplands and wooded areas. Its measurement can however be influenced by anisotropic properties of surface targets leading to occurrence of directional effects on the signal. This may lead to an incorrect interpretation of thermal measurements. In this study, we perform model assessments and check the influence of thermal radiation directionality using data over a vineyard. To derive the overall directional surface temperatures, elemental values measured by individual cameras were aggregated according to the respective cover fractions/weights in viewing direction. Aggregated temperatures from the turbid model were compared to corresponding temperatures simulated by the 3D DART radiative transfer model. The reconstructed temperatures were then used in surface-energy-balance (SEB) simulations to assess the impact of the Sun-target-sensor geometry on retrievals. Here, the pseudo-isotropic Soil-Plant-Atmosphere-Remote-Sensing-of-Evapotranspiration (SPARSE) dual-source model together with the non-isotropic version (SPARSE4), were used. Both schemes were able to retrieve overall fluxes satisfactorily, confirming a previous study. However, the sensitivity (of flux and component temperature estimates) of the schemes to viewing direction was tested for the first time using reconstructed sets of directional thermal data to force the models. Degradation (relative to nadir) in flux retrieval cross-row was observed, with better consistency along rows. Overall, it was nevertheless shown that SPARSE4 is less influenced by the viewing direction of the temperature than SPARSE, particularly for strongly off-nadir viewing. Some directional/asymmetrical artefacts are however not well reproduced by the simple Radiative Transfer Methods (RTM), which can then manifest in and influence the subsequent thermal-infrared-driven SEB modelling.This work was supported by the ALTOS project (PRIMA 2018 - Section 2), with grants provided by ANR via the agreement n°ANR-18-PRIM-0011-02 as well as the CNES/TOSCA program for the TRISHNA project. First author acknowledges the financial support of his PhD from CNES and Région Occitanie. The field experiments were carried out in the context of the HiLiaise and ESA WineEO projects. Joan Boldu (proprietor) and David Tous (SafSampling) are also acknowledged for allowing/providing access to the site and other site related data. Nicolas Lauret’s help with preparation of the DART mock-ups is appreciated.info:eu-repo/semantics/publishedVersio

A novel method to obtain three-dimensional urban surface temperature from ground-based thermography

Urban geometry and materials combine to create complex spatial, temporal and directional patterns of longwave infrared (LWIR) radiation. Effective anisotropy (or directional variability) of thermal radiance causes remote sensing (RS) derived urban surface temperatures to vary with RS view angles. Here a new and novel method to resolve effective thermal anisotropy processes from LWIR camera observations is demonstrated at the Comprehensive Outdoor Scale MOdel (COSMO) test site. Pixel-level differences of brightness temperatures reach 18.4 K within one hour of a 24-h study period. To understand this variability, the orientation and shadowing of surfaces is explored using the Discrete Anisotropic Radiative Transfer (DART) model and Blender three-dimensional (3D) rendering software. Observed pixels and the entire canopy surface are classified in terms of surface orientation and illumination. To assess the variability of exitant longwave radiation (M_LW) from the 3D COSMO surface (M_LW^3D), the observations are prescribed based on class. The parameterisation is tested by simulating thermal images using a camera view model to determine camera perspectives of M_LW^3D fluxes. The mean brightness temperature differences per image (simulated and observed) are within 0.65 K throughout a 24-h period. Pixel-level comparisons are possible with the high spatial resolution of M_LW^3D and DART camera view simulations. At this spatial scale (< 0.10 m), shadow hysteresis, surface sky view factor and building edge effects are not completely resolved by M_LW^3D. By simulating apparent brightness temperatures from multiple view directions, effective thermal anisotropy of M_LW^3D is shown to be up to 6.18 K. The developed methods can be extended to resolve some of the identified sources of sub-facet variability in realistic urban settings. The extension of DART to the interpretation of ground-based RS is shown to be promising

Remote Sensing Studies of Urban Canopies: 3D Radiative Transfer Modeling

Need for better understanding and more accurate estimation of radiative fluxes in urban environments, specifically urban surface albedo and exitance, motivates development of new remote sensing and three‐dimensional (3D) radiative transfer (RT) modeling methods. The discrete anisotropic radiative transfer (DART) model, one of the most comprehensive physically based 3D models simulating Earth/atmosphere radiation interactions, was used in combination with satellite data (e.g., Landsat‐8 observations) to better parameterize the radiative budget components of cities, such as Basel in Switzerland. After presenting DART and its recent RT modeling functions, we present a methodological concept for estimating urban fluxes using any satellite image data

Urban energy exchanges monitoring from space

One important challenge facing the urbanization and global environmental change community is to understand the relation between urban form, energy use and carbon emissions. Missing from the current literature are scientific assessments that evaluate the impacts of different urban spatial units on energy fluxes; yet, this type of analysis is needed by urban planners, who recognize that local scale zoning affects energy consumption and local climate. However, satellite-based estimation of urban energy fluxes at neighbourhood scale is still a challenge. Here we show the potential of the current satellite missions to retrieve urban energy budget, supported by meteorological observations and evaluated by direct flux measurements. We found an agreement within 5% between satellite and in-situ derived net all-wave radiation; and identified that wall facet fraction and urban materials type are the most important parameters for estimating heat storage of the urban canopy. The satellite approaches were found to underestimate measured turbulent heat fluxes, with sensible heat flux being most sensitive to surface temperature variation (-64.1, +69.3 W m-2 for ±2 K perturbation); and also underestimate anthropogenic heat flux. However, reasonable spatial patterns are obtained for the latter allowing hot-spots to be identified, therefore supporting both urban planning and urban climate modelling

Accuracy of five algorithms to diagnose gambiense human African trypanosomiasis.

Algorithms to diagnose gambiense human African trypanosomiasis (HAT, sleeping sickness) are often complex due to the unsatisfactory sensitivity and/or specificity of available tests, and typically include a screening (serological), confirmation (parasitological) and staging component. There is insufficient evidence on the relative accuracy of these algorithms. This paper presents estimates of the accuracy of five algorithms used by past Médecins Sans Frontières programmes in the Republic of Congo, Southern Sudan and Uganda

The Laegeren site: an augmented forest laboratory combining 3-D reconstruction and radiative transfer models for trait-based assessment of functional diversity

Given the increased pressure on forests and their diversity in the context of global change, new ways of monitoring diversity are needed. Remote sensing has the potential to inform essential biodiversity variables on the global scale, but validation of data and products, particularly in remote areas, is difficult. We show how radiative transfer (RT) models, parameterized with a detailed 3-D forest reconstruction based on laser scanning, can be used to upscale leaf-level information to canopy scale. The simulation approach is compared with actual remote sensing data, showing very good agreement in both the spectral and spatial domains. In addition, we compute a set of physiological and morphological traits from airborne imaging spectroscopy and laser scanning data and show how these traits can be used to estimate the functional richness of a forest at regional scale. The presented RT modeling framework has the potential to prototype and validate future spaceborne observation concepts aimed at informing variables of biodiversity, while the trait-based mapping of diversity could augment in situ networks of diversity, providing effective spatiotemporal gap filling for a comprehensive assessment of changes to diversity

Quantifying Vegetation Biophysical Variables from Imaging Spectroscopy Data: A Review on Retrieval Methods

An unprecedented spectroscopic data stream will soon become available with forthcoming Earth-observing satellite missions equipped with imaging spectroradiometers. This data stream will open up a vast array of opportunities to quantify a diversity of biochemical and structural vegetation properties. The processing requirements for such large data streams require reliable retrieval techniques enabling the spatiotemporally explicit quantification of biophysical variables. With the aim of preparing for this new era of Earth observation, this review summarizes the state-of-the-art retrieval methods that have been applied in experimental imaging spectroscopy studies inferring all kinds of vegetation biophysical variables. Identified retrieval methods are categorized into: (1) parametric regression, including vegetation indices, shape indices and spectral transformations; (2) nonparametric regression, including linear and nonlinear machine learning regression algorithms; (3) physically based, including inversion of radiative transfer models (RTMs) using numerical optimization and look-up table approaches; and (4) hybrid regression methods, which combine RTM simulations with machine learning regression methods. For each of these categories, an overview of widely applied methods with application to mapping vegetation properties is given. In view of processing imaging spectroscopy data, a critical aspect involves the challenge of dealing with spectral multicollinearity. The ability to provide robust estimates, retrieval uncertainties and acceptable retrieval processing speed are other important aspects in view of operational processing. Recommendations towards new-generation spectroscopy-based processing chains for operational production of biophysical variables are given

The Chikungunya Epidemic on La Réunion Island in 2005–2006: A Cost-of-Illness Study

For a long time, studies of chikungunya virus infection have been neglected, but since its resurgence in the south-western Indian Ocean and on La Réunion Island, this disease has been paid greater amounts of attention. The economic and social impacts of chikungunya epidemics are poorly documented, including in developed countries. This study estimated the cost-of-illness associated with the 2005–2006 chikungunya epidemics on La Réunion Island, a French overseas department with an economy and health care system of a developed country. “Cost-of-illness” studies measure the amount that would have been saved in the absence of a disease. We found that the epidemic incurred substantial medical expenses estimated at €43.9 million, of which 60% were attributable to direct medical costs related, in particular, to expenditure on medical consultations (47%), hospitalization (32%) and drugs (19%). The costs related to care in ambulatory and hospitalized cases were €90 and €2000 per case, respectively. This study provides the basic inputs for conducting cost-effectiveness and cost-benefit evaluations of chikungunya prevention strategies

The stochastic Beer-Lambert-Bouguer law for discontinuous vegetation canopies

International audienceThe 3D distribution of canopy foliage affects the radiation regime and retrievals of canopy biophysical parameters. The gap fraction is one primary indicator of a canopy structure. Historically the Beer-Lambert-Bouguer law and the linear mixture model have served as a basis for multiple technologies for retrievals of the gap (or vegetation) fraction and Leaf Area Index (LAI). The Beer-Lambert-Bouguer law is a form of the Radiative Transfer (RT) equation for homogeneous canopies, which was later adjusted for a correlation between fitoelements using concept of the clumping index. The Stochastic Radiative Transfer (SRT) approach has been developed specifically for heterogeneous canopies, however the approach lacks a proper model of the vegetation fraction. This study is focused on the implementation of the stochastic version of the Beer-Lambert-Bouguer law for heterogeneous canopies, featuring the following principles: 1) two mechanisms perform photon transport- transmission through the turbid medium of foliage crowns and direct streaming through canopy gaps, 2) the radiation field is influenced by a canopy structure (quantified by the statistical moments of a canopy structure) and a foliage density (quantified by the gap fraction as a function of LAI), 3) the notions of canopy transmittance and gap fraction are distinct. The derived stochastic Beer-Lambert-Bouguer law is consistent with the Geometrical Optical and Radiative Transfer (GORT) derivations. Analytical and numerical analysis of the stochastic Beer-Lambert-Bouguer law presented in this study provides the basis to reformulate widely used technologies for retrievals of the gap fraction and LAI from ground and satellite radiation measurements